Scaffold Ga0315331_10072945

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10072945
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2547
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_1007294510	F022555	AGGAG	MAITPKFKPGQLVKYDHPANPLVGLVKSTQFARRRGNPVLVLVQWCNERNTEEYIFQKDLKLVEEV
Ga0315331_100729457	F015346	GAG	MEHKLYNVGDLVANDHNGVLGIITRSNYWVTDEYLGDTVELVDVMFGPSVSKQYPVRYLVEA
Ga0315331_100729458	F021674	GAG	MERETYNTRLKSNPENIPVGSLLRVKKHCRKNVTIIHNGEYGILAPSINGKHITHDVLFPNGTRCIYMPLNWDVISHAK
Ga0315331_100729459	F006383	GGA	MLSSTDKMWAVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN