Scaffold Ga0315331_10025631

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10025631
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4360
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021014	Metagenome	221	Y
F021957	Metagenome / Metatranscriptome	216	Y
F045723	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_100256311	F021957	N/A	KGEPVESPSNVPFVMDVKNRDSLKSINGVMNNFKKKNMLPIMSTINLEGVEDSIPTGAKFGKIKATTGDAVELASEDNDTLKDFLELIEYSNGKILDLHHDRVKIGTDGDADLVEGIINNDFVEVAE
Ga0315331_100256314	F021014	AGGAG	MAYEVKDGDVAIVISPELDDEGAWTGILRTGLVFGESQHPMAMRSAMDYGLTMAAASEVLEDYPELADYFDEARHRILKEMFPKQYAESELALEKEMDYTTDGNVIKLTKWTKTLGEA
Ga0315331_100256319	F045723	N/A	MRGILWPFLFCVFVICILPVLLVDNAKYCKQSIVPCYPWTEPREWN