NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10025571

Scaffold Ga0315331_10025571


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10025571 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4365
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064107Metagenome / Metatranscriptome129Y
F079210Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0315331_1002557114F079210GGAGMIKKGDMVGFKFKDDYHLAIVIDDLGQGYPYGRYTGLLIGSDGDYIPLNETELTLLSTKAQVDGWERQKKLQKLLDKNKQTN
Ga0315331_100255715F064107AGGAGMSNQIKLTFDISDELLDKLLTVMAITSQQNALQGAMPMLMGAMGGATPPPPQKGEEKPSMGFDTSQTKETK

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