Scaffold Ga0315331_10020242

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10020242
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4920
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F015102	Metagenome / Metatranscriptome	257	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_1002024210	F103094	AGGAG	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNNKPYISFWKKGGEDDRAITLS
Ga0315331_1002024215	F015102	GGA	MESDDDAEDKNTPFDDVTHWVGNLPRKNTHSTKRVTKRSAWRKIKSNFLSEKLGLETKPK
Ga0315331_100202423	F004493	N/A	MQNKIVKNNALDFDDEQWSALIAGNALLITWFVEWIKKVEEGKRLQYYQTLQIQDFFKLKYNQTAGCDPWPMKDSKISLDGKFVSEGDDDLEPYFIINTDDGVGYIYPYAFVALPKKSGGHHVVRMD
Ga0315331_100202429	F005813	AGGAG	MKLYRNSNGVWAGTQADARKMCGKNYTPVDVPVDKSSLLRFLNANKVGSGSSSDTKEITSEATELNKGAMSWIRWSYDRMLDGKYDDAKEMLYKGLVLARKERTDDKEST