Scaffold Ga0315331_10014503

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10014503
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5840
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F090864	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_1001450311	F055213	AGGAG	MTSTQRYGQPQVGDLFVSETQGRLHILVSYEFVYKDRVDFYNYYDVKLKRLDDGASQRWKVAQHEFYRKYKPLVPDPQT
Ga0315331_100145032	F035970	GAGG	MNNKWNIIMKTAKELATEYRKEGWTGDCNDFTQASSSVSQELTNREMETLWDEFSDQELLTDGMIFTFTRQGRDKIISVKNCPTK
Ga0315331_100145033	F090864	GAGG	MDYAHWLRADMTHLVSHNKSGTGYALQETDGRWVVRFHHNYDKYFVFTKNAFKHGYLKDCGIVNLEDNNE
Ga0315331_100145034	F025385	AGGAG	MSYFKNQRSPVNHQTDDQVITSFMSQAPNKSRTLRTDGQSLWSFDTRIAEHIADGQGQGATIVYDYTYGGGHYVSQTTSNHVRLTKKQVPRPNWMSVNEAQEHGLCPLVESRHDTSRQS