Scaffold Ga0315332_10535563

Overview

Basic Information

• Taxon OID: 3300031773
• Scaffold ID: Ga0315332_10535563
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 735
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F007052	Metagenome / Metatranscriptome	359	Y
F009558	Metagenome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315332_105355631	F009558	N/A	NEFGVIEHDIIAHIPPQHYVVKWKEGFERKEKHFDNKKKAQAFFKTVRKTATDFIRIVKW
Ga0315332_105355632	F007052	AGGA	MERITETYWVAKLSKKGEFLSSEIFMSLEEARIWAMKEAKLLISHIEMLRSTNVGDIVVEIDKHFFGYEASSDEILKNSVKVI
Ga0315332_105355633	F002874	N/A	MSKNSTKVDLSLNRSLQELEDSYWEFIDVTEGDDSANWPKSVQEDFSALEGYLMRQDRL