NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315332_10051110

Scaffold Ga0315332_10051110


Overview

Basic Information
Taxon OID3300031773 Open in IMG/M
Scaffold IDGa0315332_10051110 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2604
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011337Metagenome292Y
F094377Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315332_100511102F011337AGGAGLLRFKQYIAEIGVNPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPISPAIMRRIWPKPVRTKVFHLTDFDGVKKVIKMQGGKRSISAFFNIEPIVLDTGIKSDGGFILEMIADILIASQDDLASQPDKTGRRWITLSSLMNNPTDADPGLGGGAKLKGMEKDISGMLVDIVTKHSDITPLPNINKAWNYLGKSTGGKEKSLIIKDYIDGMEKIMKKHSKVLGALLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIEKVHIVTGDDPEDWDETDFGLPVKVWNDRGDAADYITRTVQRIKL
Ga0315332_100511104F094377N/AKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVIKDYFDGVEKIIKKHKKVMGNIFYGYARSKRSTEDSWDEQLVNNIKVKTVHLIKPTQRKIDTANPDRTHPIDSYEFAKEKAEKLFGTVKEWDFSTELEIYTREVVKKEQPPRNIAY
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