Scaffold Ga0315332_10020230

Overview

Basic Information

• Taxon OID: 3300031773
• Scaffold ID: Ga0315332_10020230
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4072
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315332_100202304	F004988	AGAAG	MVERVRAICPRCDGNGYIKVQEKELDCPQCEEKFMHMGGEVITHNGYVMLPKNQTRINIEGGREAIHKKAKKI
Ga0315332_100202307	F030928	AGGAG	MKKILTELKAYINFLLAGLTIFICLIVIIVNSRYIVKLENTIDTMWREIEQVKETNIDLYQFIEEHKNDFE
Ga0315332_100202308	F000720	GAGG	MILNKENKVRKEIPNRMMSATFALPIDGRRVVGILDYTANKTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPEKRQRELSTDPYAMKE