Scaffold Ga0315332_10017485

Overview

Basic Information

• Taxon OID: 3300031773
• Scaffold ID: Ga0315332_10017485
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4356
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009492	Metagenome / Metatranscriptome	317	Y
F010689	Metagenome	300	Y
F103221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315332_1001748510	F010689	N/A	MIEMIDFQNKKWQVVGKCSGERVNDHTKLKEQWGCDLVLKNNQNQFFMLNEIIDVEFEDV
Ga0315332_100174853	F009492	AGGAG	MKNLSMKTLIIYSIAMMGLFGIVRANEVVTETTQQPVVSVTGEFSTDITFGDATTFTSPYSGLVLSGDGWVLSTNLSDGMVNIEEAKYSWNVVDGVTLTFGSQAEPYGLAWGLHRPSNNWFVSNPRDHSITNGVGIGLNKWGVGADLFWGGDSMDEEMESELYWAGRFSYELNLLGIDSNFGLSLNSNEAQLIDVSMGNNLFTTSLEYDLSEEADGAYWLRGVVTPPQAQGAFLLIGLNSDDVVTYGVGYKCSDNMKVMSEFTSGTDSDGNDIDNDFAIRASYSF
Ga0315332_100174854	F103221	AGGAG	MAKKMSSEDKINDTTLHELLLMMDARLKHIEDISADNRAIIVKLVKQSNQVVEFLKQLELEVNDLEYGIEEPPPFGANLPSDKLEELKELFDDFKEKKDELKEFEKELKKHKGKLTPGQVGES