Scaffold Ga0315288_10920025

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10920025
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 790
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F098812	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_109200251	F006182	GAGG	MNVNFKVSGTMRIPDDAIKHYDVAGKLYALEFNDIIYMLQVCFVAEGGAWGHEIITDHQDMENHSIKNVRYDDADFVAI
Ga0315288_109200252	F098812	AGG	MPNWVMNELSCIFQTSEEYNAFKTKANTEGLYNSFFPMPEVLEGTRSPHLAPGDFINAVNKRNNTNYLTLEEVVLANDNWDSQDAKGIIKNIKAFEETGYHDWYSWNLDNWGVKWEASKCKLKELSDFNTIVFSFDSPWG