Scaffold Ga0315288_10452066

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10452066
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1284
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F007691	Metagenome / Metatranscriptome	346	Y
F027417	Metagenome	194	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_104520661	F003212	AGGAG	MKDKWLVTLEIDTYDGNPKDWDWEKLSTGSDVIKIIESQFKGRVHPTSEGESNE
Ga0315288_104520662	F027417	GGA	MGYSYRVTFVTDYLTIITNVELELDDTTGNLSDAAYEQAAINGKNNIEDQIGKIDETIINDITVTLILDDEEIELNER
Ga0315288_104520663	F075748	AGGAGG	MNKQEILKVIDSTDNFNAFIEGMDTLNGQALSLVIDVAGVEGEDWTDEECLETIKEIVDMTNAYRNTHDWND
Ga0315288_104520665	F007691	GGAGG	MDTIEQLINEIYEDNYSHLEFNENMGGEDCKCAIHTTLNTIVKYRDGKEEE