NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315288_10447716

Scaffold Ga0315288_10447716


Overview

Basic Information
Taxon OID3300031772 Open in IMG/M
Scaffold IDGa0315288_10447716 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F013755Metagenome / Metatranscriptome268Y
F045750Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0315288_104477161F045750GAGGMETVMSRIGRMLGLRMHNTKRPVCPVPQSTQTVSSGPDTITIDKVLKRKTRKRLKDTYMKTKDSIDKVNALRIKGLTYKAIGAEMKLSKQRIFQIIAAGKKRDADNSKWTAGLSSRNSNLMERLDIKDKETAINAIHAREIAPLKWPNFGMRSYHDLCAWLGTLPIDSGLGRHCPHCGKTSKQ
Ga0315288_104477163F001259AGGAGGMKDSFAFIYVHKGNGTIRVESLETARNVDGNPEWKHVSTINPHVVLESILRATIKERNLIIKHLLK
Ga0315288_104477164F013755N/AEQSQGGQAVSDTPISDSTPHNVADLAMLCRRLERLAAVRLGYIQQLQTENDSMRADLLLWNEKEVK
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