Scaffold Ga0315288_10267591

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10267591
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1807
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019103	Metagenome	231	Y
F041763	Metagenome	159	Y
F054585	Metagenome	139	N
F066591	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_102675911	F041763	AGG	MTITVLSKRIRDALAQAPDGMTAMELSLALDIGASQIS
Ga0315288_102675915	F066591	AGGAG	MLALLRAAPSSGLGIPWRQGVEMSDNEDYELASLMFGIAITLLVLFALVGIAGLAGFIWGML
Ga0315288_102675916	F054585	GAGG	MNWLAAAIIALVLGTSHYLDWPSEFEAAQDAAAAYRAARTEQERQQRFEAAAQAMCGENAAWKLLADGSVQCFTHRGFKTRKVTL
Ga0315288_102675917	F019103	GGAGG	MSAPVWTSGYKPTKEDLKGLFNHCFETDGGLVLDCYLIYEAEERETRDEPGCAASMELVFALVKGVDISEVLGDLAETIEAEALSDLEDQIKDAALERGQA