Scaffold Ga0315288_10231028

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10231028
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1983
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_102310281	F034772	N/A	MKNLIDYFTPRTQEHKSFLKHFLSTLTAFIVLGGMFYCLMYLKAL
Ga0315288_102310282	F009958	N/A	MKNRNLELWNRGFELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVDVSQKWLTETDDNLQPHVLGVRLLEDLRLEMQEEINSDLANYNFWEWKTSNDDSNYNFYNEL
Ga0315288_102310283	F006463	N/A	MNKGTIYDQLDWWQRQDRGSFDLHLYLEICRIKKNEQTKYKPMKRFKATFKTWAYVGAPVKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK