Scaffold Ga0315288_10204244

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10204244
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2144
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_102042444	F002433	N/A	VSVGEWMAVGGFVIVLLTAIFSSMRFMVKSIMRELLPNGGNSMRDQISRIESRLDQLLLEIALKK
Ga0315288_102042445	F005503	GGAG	MTSGEIGLFIFMLVVCVLWAICSYAVGYKEGHKDGYQRGKAVGRHASGQAVR
Ga0315288_102042447	F000403	AGG	MSDFVEIINPRTMTCKLMENGVIVAEYKVEQCDKCSRLLKFDEFGYQKGYDRTEKII