Scaffold Ga0315288_10088585

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10088585
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3569
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F081046	Metagenome	114	N
F088509	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_100885852	F088509	N/A	MTSIERQLEEGLATALAGVSGVNIFKSDTEGARLLPSVVIQVSIGSEEIIPYSGVFRCPATITYSTRADTTTRAELDSKFHEILQVMYQSPNLASVLTTATLKVFLANVTSESPEIKSENRTWSKSLSLDISCTSI
Ga0315288_100885854	F081046	N/A	MTPKTIKYSQRLGDIIRCLPACKYLADQGHEVFVDCLPQYHGIFEMVSYAKVGNKGDVIDLEIWPNKYQEYRFSNKTWTEFVYSHPAINKADPTSILFDKLDDKPAKGLPAEYNMVAPFGISQGHRRDPLQIIVEARKKCGEKNFFVLCPPGMEIKGLPTYTAPNIPEMARAIRGAGEFWSIDSGQMAIAAGVRKESKVVYFPQTNEPFDKDNIFIWDSVELN
Ga0315288_100885857	F003049	AGGA	MKNAKQIIGCRKAKKGEDAKSLGMIRFGKPRPDPTKYVKVDITYDDKAKKELYEAGMLALKHDPDAVIEYVIVKALCELAKCKK