Scaffold Ga0315288_10059237

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10059237
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4524
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F027829	Metagenome	193	N
F079522	Metagenome	115	N
F083616	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_1005923710	F002287	N/A	MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNRLDSMESMVIKTIWLAQYTSNGLLQNLGGLVQQTVSIIVGNQTVVKNLPIQFNQGANGQAFDRLHENGGAGHLLGTDLFVQTVQPCEIRLLTDIVIPPQVAFEVRIDSNQAVYGAGAVVCALSGYGKIFSAGNTF
Ga0315288_100592372	F079522	GGAG	MNQNVNYGKDREAIVPYNVAIWWHLAFDVDKSIFNPTYIPLELLEDIQQLQRRSIIKALPDSDPGRKWLILRFFPSGI
Ga0315288_100592373	F027829	N/A	MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKQYSFRVYLAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKALVSAFKKLSNFIDTASPNLENKLSQELMTYDQWEKEYFERKNMGIININREEYKK
Ga0315288_100592375	F083616	N/A	MFLQLHDGPEIPYGLRPFPYPKRSGPMMPVRYAEDPFAPGSPVMRTTPYRLLSGCDQAQVYAEFVPQNKEGWKLRLNQVKQSQQLVKNYQMLRAAKGTGSVPVYSADGTITAFKQGDKVEEVAAYIELGLKAFQIAQQGIDAGDARRLRDNAQQLYDENKWGIADVCNQTLVMLQNNAQNCYDSLNWWLRDQGTPGKSKGQIRISNRAVVLRQNALLILVKEIEAKGGSFTPGGKGAPMGIAAILALVVGAAFLKF
Ga0315288_100592379	F004838	N/A	MALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFTSASRHANPSVTNLTQNEFEVNEALLVENIGFYVKDAAGGIQNFQSTYGSNAIILFDLIIGNKRVMKDTPVFAAGSPYTFANVANVSQAVGEDTLLSFLPRHQVFMEGAGVLIPPQVQWYVDYRIFNVVTGATITPGDTATIGCYLFGTRVLLNFNTSI