NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318546_10854866

Scaffold Ga0318546_10854866


Overview

Basic Information
Taxon OID3300031771 Open in IMG/M
Scaffold IDGa0318546_10854866 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005952Metagenome / Metatranscriptome385Y
F015551Metagenome / Metatranscriptome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0318546_108548661F015551AGGAGGMNDHDRDSDHANDNGDHERPGSKQVALAPAGGALTSLAALQKALASVNTAAIIGRTGLPMMLFKREGSGTWGFGQKRTIPESGSKWAVNPLTFKYGYICFGDNNKVVDERLVSVSQPKPVITELPDTGFPWQEEWSVNMK
Ga0318546_108548662F005952N/ARGDVIAETIRSPKQVELRAKARGLKIPAELIVSRRSGVSLVRSENAHAPVPGRVELARTFSEALEAFQGGRQA
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