NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318521_10182131

Scaffold Ga0318521_10182131


Overview

Basic Information
Taxon OID3300031770 Open in IMG/M
Scaffold IDGa0318521_10182131 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F029856Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0318521_101821311F029856N/APRLVRLADKGPDAGIHMVAWTDGYTTAERALRRAGLGFFGLRAVLRVLSPAESDALLGVAAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGFLNTSGKRSQA
Ga0318521_101821312F006575GGAGMTIESATATSPYLSLRQAVRPAILAHRLLAGDQERAGKLAAECEDLLYLTRELLKAAGRARILAPAPAPRMLEESGGDRQAQFLEAYADAGLLWAKVVGSALALAGALIDRGEWEDVRRLASFLADAGEDSAAADLRIRLGHAVWETHREQLRAISNDMPAAAIEPAINALRAVLREVPEEFPDRNREVNCYLPPLASAIHAIMREQEAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICLHPGGKTA
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