NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318509_10508571

Scaffold Ga0318509_10508571


Overview

Basic Information
Taxon OID3300031768 Open in IMG/M
Scaffold IDGa0318509_10508571 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)673
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011286Metagenome / Metatranscriptome292Y
F041539Metagenome / Metatranscriptome159Y
F054253Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0318509_105085711F041539N/AAVDAGPCAHDQSRNCLDLPATINFSSVPEISDRIVGEEKVKQPPLKNPAEGSPASTPYTGPIIGASPRPGRTPTVGYHWSLE
Ga0318509_105085712F011286N/AMQILQALFVSVGALSLGRARYAWVKWARWGSIAVFSAAVMVALILTLRWALIRTS
Ga0318509_105085713F054253GGAGGMFGMFIVLLAVVIASLPAPLAAQTVKVGLINSYTGFVAQAADEGGKAFDLYLKLHEKE

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