NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318509_10493352

Scaffold Ga0318509_10493352


Overview

Basic Information
Taxon OID3300031768 Open in IMG/M
Scaffold IDGa0318509_10493352 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)684
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006655Metagenome367Y
F060443Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0318509_104933521F060443N/AGCGELTRRSACSEHESRRRYHPAMAWRAKCYECGQDAPITQPLYPKQSLLEQGDLRLAIATYEAHPRRPTDTRSCSAVSTTVPQYQMRKAHSTTPDEDPPRVAPRSSPLRRTKKR
Ga0318509_104933522F006655GAGGVRPPLRAPLLLLALFLLTSATTAHAGGAWVLWAHSYELWIDKNKESHRRDVAWKKVAATVAKADCNGRAVSEARAEYSTLTGKGVAATLSGSEVGFNQKNTRFNRGYRR

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