Scaffold Ga0318509_10222048

Overview

Basic Information

• Taxon OID: 3300031768
• Scaffold ID: Ga0318509_10222048
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F007884	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318509_102220482	F000092	N/A	VEVSLIDGKVEITPKEDGQIDPLQLLKATYDSGVTAGEMDVTARGKIVKDSSGIPALQVQSNRSFSLVPNELSKGLDSLAGTQTMVTVRGQLFKKPPGKKQKVDTSVPLKLLILEVEKTQ
Ga0318509_102220483	F004042	GGA	MRGGTMNPKRFLLVLLFGCTIAPVSQAQIKHIEMRVEGMT
Ga0318509_102220484	F007884	N/A	SYRPYEAKDGKREWFIGPALTWLHSQDDRIEGNTENGNGGDVLLAGMTTYVGVRPGMHLWFGMDWDVAHSTGAAFMPIRRHISFGVTQQFRMHFFK