NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1014149

Scaffold Ga0308401_1014149


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1014149 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1872
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023603Metagenome / Metatranscriptome209N
F054062Metagenome / Metatranscriptome140N
F102264Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10141492F023603N/AMLYTTEDFTGQYRLDSNAITQADYQRAIDEHERVLLEYFFELDSVEKIYAALPAAAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELAAPTATIPYPSPIPQTPDFVAIGDPVRAYTATGEVQTSVVNVTATDVTLASPLSAGPVRVIVENLRIRINRAYLTF
Ga0308401_10141493F054062N/AMGKLRELSWKDFCDGLDKDPPDDVQKEAEQVFFDHVFPEALLTFFQNASELLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLIPVLKSLGAEPEKATFLEICAFLTTYKS
Ga0308401_10141494F102264N/AMRFLDYLQVVIRLIRPERNRKGQRVLQDFYEYGLARTTDIAEALPPQTPLECLQRIADVRAIHTLIAGATARLTWKVAKRYNGTEIPDEFRSRNLDRYAGHIVADYLVLGQAFFSENFTYISPLEAFPDTTLSIQRPNGTPLQSAFWLMRQFWELNRAETQILSLMGAAAFLYPKDSNMPLTGDELDQLRKNLQAKVRKGGVGGIEPVSVPIELIPIPIDNQKYRLIEIRTQLIRELCNLFQIDSSLLNDPENKTYS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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