Scaffold Ga0308401_1007290

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1007290
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2769
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026891	Metagenome / Metatranscriptome	196	Y
F040649	Metagenome / Metatranscriptome	161	Y
F069555	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_10072902	F026891	GGAGG	MTIVAGAPIEIESNREDGRLWYAQNGARRTRLALYAAQGVHIERVDTEVYLARDAVPVWTGEDWSREASVYLYPTEKDELYAVWLNTHCGFAVVPKDAVLWEASSFGGPKNSESKIAVLETGCYVEEYTYKRATPSEWFAITLDGAVRRLGEKSRVIALALRGDKDAARLAELKGWLSELTKQLEVQDEL
Ga0308401_10072904	F069555	AGGGGG	MRKAIKDQAVKLAAAIRETGKREIEYRIGSFELELADGSRPPAGMLQRIQHLSIKTETVCQWAETGGARRDCKLVYSARDGAYYLGEYRWLDNNGLRCDVVYYQVPKHLEPQIRSLQKAMAQESQASASGCDSGGGSCSPCASAAPFTEGRDA
Ga0308401_10072905	F040649	AGGAGG	MRKLNGDNPARLFAQLSAITSDCDPEEYPPLEYDIDGAYLRLTGGSPATGGWLLAIKTFELADDLVQYAEGSGALRRSFRLIYLAPLETYFWGEYRWRDANSMCIRACWHRIPKDYNVQLDALRKSRQRGCRDA