Scaffold Ga0308401

Basic Information
Taxon OID	3300031767 Open in IMG/M
Scaffold ID	Ga0308401_1004192 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3775
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3775

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F038570	Metagenome / Metatranscriptome	165	N
F042758	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_10041922	F042758	AGGAGG	MKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTATTPPSFAIQSSADNATFTNLAGKSVTSIPANSEAVINIRDEDLPDGHRWIRAAVNGNATVAVVFIGTSARNNPPAKLASTTIVD
Ga0308401_10041924	F022604	GAGG	MLSAVNAVHAVVAAVPGIVAAYTTVPMSITTAALPMALVTPTGENRRQHAHAMVRIETLVRVRIVHSPIAQGVTEAQQSALYTLADDVMTKITDDITLGGQVDHVASVDADEPSIYTLAGTDYLSISVVARVVEKI
Ga0308401_10041926	F038570	AGGAG	MPATHLRRVQLGQQTAFAAPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLIVFSQRHAEGELELQTTYEDILYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGATGAEYRVVGGILREWTLRYEANAGVTENWAFIGRSVQANALTGSLPTRVVTPVVSTHASWFMDNIGTAHGTTPIPGTVIEAELSINTNRHLKMFEGAQPITWGEGRWEAQLTITAEFNTTAKAWVDALLTDRVARNIRANFVETANTRELRVDFVGLIGEPVELFGDRDGNMTAELTFKALVAGPLNNWLQIRTINGIATLP
Ga0308401_10041927	F025421	N/A	MIDLSKVRRIDRSAPGSFMEYAHLQATISEGDLTAIARLLESYGVDTSQLSFNELVDVVKHIAGEPTPLGDTSATA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308401_1004192

Overview

Ecosystem & Geography

Associated Families

Sequences