NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1002418

Scaffold Ga0308401_1002418


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1002418 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5010
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F057955Metagenome / Metatranscriptome135N
F068330Metagenome / Metatranscriptome124N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10024181F068330N/ALGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLIAHGIMACQPSPQMRLAHGSAFALHLVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSTYVVSVASRNPTSGNQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATVMADISFIAIKSNIQHQIERRQKSGRYDYFDLIAWSVFLVFVAVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLAGLATLTILTKVVDRETAPKSSARLDEQFATNGVTNRQGVKM
Ga0308401_10024182F076974AGGMDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESVLVTDGKLKVAFCVPLFGVTECLSLSKHDKSAELQLPTQLRIPL
Ga0308401_10024184F057955N/AMIDLIEFFSTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKSVTEKMDELLRDIGKLIDKAEATIEELERARGWKKDA
Ga0308401_10024185F008994GAGGMRVTRFAIDENGRALFPDYFIVDDNTRLALAMYSANINVQTIVDEGLAQTPWLSTRWPGRTVSFNEWRDAFARNGHAFPKYHAQISERVRLSELVNINRAFVELFMNGVDLTDPLNAQTHRELLTEQNVDLVDFLK
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