Scaffold Ga0308401_1001008

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1001008
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7864
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F008499	Metagenome / Metatranscriptome	332	Y
F019420	Metagenome / Metatranscriptome	229	Y
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y
F060673	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_10010081	F060673	N/A	KPMSFISALFQRIGVGIEGKQQRVEGGRRVRVYRLVNVERARLRTTGIRKRHADRAAPVYEFLGTPVTTPYRNKRKSGVVTVAAAVH
Ga0308401_100100810	F025895	AGGA	MSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAPGGGGGGR
Ga0308401_10010082	F019420	AGGGGG	MATYRDVTFWSGATDGDCEAAVIRARLLGMVIELGDDDERPDKMTAFYAADGGGIIVYEVECREADGRMTARWQRVASLEDVRRNRAYAACLERLGL
Ga0308401_10010083	F006252	N/A	VKSFDEQAAFGLPYERVIAQTAALLLYPQRLDLTLVRLDAYAPLDYLLLDGEQPVAALEVKRRSVRSDTYPTTIIPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308401_10010086	F004307	AGGA	MFKELIRNGEEARPELNGAYVGRFLGVKERQRPTFETRNAPEPVMEDVFVFEFEVEDDDGNPLRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRARRKEKQIDDVPF
Ga0308401_10010087	F008499	AGGA	MTYRSKSEPRWKRKEREALKALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308401_10010088	F005028	GGA	MRDDDLHAAMRFFAERLRGVDGDETRLLRWTRHKLRNDARAVAALMLHVGYRPTFIRYFLRYHIPALNESAAVGETYTDPDATDAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308401_10010089	F032180	AGGA	MWWKIEEIPHQELEDWTKAVGRFERAAKRDVAVRAAGAFVIYSLDGALGYVAGREAPDGAYLVERWVRGKKGWTLYE