Scaffold Ga0308401_1000529

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1000529
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10970
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F007976	Metagenome / Metatranscriptome	341	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F025895	Metagenome / Metatranscriptome	199	Y
F031016	Metagenome / Metatranscriptome	183	Y
F032180	Metagenome / Metatranscriptome	180	Y
F043176	Metagenome / Metatranscriptome	156	Y
F044842	Metagenome / Metatranscriptome	153	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_100052910	F044842	AGGAGG	VEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADEWVERCVLYRTEDGRVAVHQLRLSLLDDGVDVAEAYILPALDAGEGVREQW
Ga0308401_100052913	F031016	AGGAGG	MTTITIWKGSRRVVLGDDIEFVEYETFIGEELGAVWEEENSRGTHTIFYRTEDGKIVVHQVLWSRWENEATYAYIHVFPALEGVNGAAAMFWRELRKAGLIPPRTTSLDE
Ga0308401_100052914	F075805	AGGAGG	MRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERAFYQTTDGRLVVAEHRYGDWGKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYDAPTRELDEWLSQYEEEE
Ga0308401_100052915	F002982	GAGG	MKIAFERTPTAICAVLTDAGECDRIISVARASDAFRAFGIFTRDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVVYWHKTHGTLAQYEEEAATLSEALARCVWALAR
Ga0308401_100052916	F007976	AGGA	MFSTELSNFLRVAIDVQAEPYPGVHVDDGVILATDGVMLVAKKYNNPVYLRGRGSLSPKAAKVLAALAEASNIGSIEVNGNRVTATAQTTLYDEKTGGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRGWETVAENPNVKVLKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVGQLRRGLRLFGARARLSVRRNAKGWLAFEDGYGHTFAVTPFVKHN
Ga0308401_100052918	F043176	N/A	MLQTYKIWEGERTFLPGDDTSKFTIIEITGEELGWFEDVVDGKTYYVYQTEGEVVINIVEQNYGIGEPSRGSIHRYSNLEEAAADGFEQALKDMRLI
Ga0308401_10005293	F004307	AGGA	MFKELINHNGNGRERPELNGAYVGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELEAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQSAVGREYQLTIETKPSGWYEIVHIAPVRKARNRKKEEDEEVPF
Ga0308401_10005294	F008499	GGA	MKKSRSEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308401_10005295	F018115	AGGAG	MNDAEERFVRWYAHLAEDAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFINRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSARILRRLCEEIND
Ga0308401_10005296	F005028	AGGAG	MRDNDLRNDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDDVVLTVVSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKALERNPRNVVED
Ga0308401_10005297	F032180	GGAG	LEEWTHSVGRFERAAKRDLDVRAAGAFVIYELDGVLGYVAGREAPEGAYLVERWVRGKKGWTLYE
Ga0308401_10005298	F025895	AGGA	MSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAASGGGGGGR