Scaffold Ga0308401_1000431

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1000431
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11968
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_100043111	F002795	AGGAGG	MATNDGLVLRGMIAAYREFVSRKDGRTYRVATVYGDLVAGETILCAVDGYDVFVDSPYARGEIVELPARMQFLRDNSGRPTIRLYVDEGVR
Ga0308401_100043112	F008135	AGGAGG	MSIVDDPRTKRVLTEAGAGIARVLDARQRHAIVLAVDVVWYIVAALPPDEHMTCRDVVRLLRWFRQGFQEREEDDGDE
Ga0308401_100043115	F004024	AGGA	MRSERDYVRQPLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESAAIRQSPGASRTFRDALRALSLEEYVRRRDERRSDR
Ga0308401_100043116	F002978	AGG	VSSVRDWRVTIVPWADRRLWFIQARRGRRVIWGIVYDADDPDSVSLARRAIATLRSAGADCSALPAVLPGVGQEP
Ga0308401_100043117	F000642	AGGAG	MQEMSVALALCAVGAAIWYMRRREAGAGRVTGWLLLYDDLGGWRVLPASYGDAGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVTQILALVGDK
Ga0308401_100043118	F001381	GAG	MQYVIATLYVLCWLALAAAAALVLPRWALPAAIVQLAVAYVMLRAWLTAAAGGDD
Ga0308401_10004312	F002978	GAG	MSVRDWRVTLKPWADRRLWFLQARRGRRVVWGVVYDSADPDSVALARRAIATLRAAGADCSALPSPLPGVGQEP
Ga0308401_10004313	F000642	AGG	VQEISIALAICAVGAAVWYMRRREASGRVRGWLLLYDDVGGWRVLPAAYGDAGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGVVLPAVFAYFTWAQVAGLQALVAQILALVGER
Ga0308401_10004315	F000855	GAGG	MDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPARAMPSIPALRWIVDWLGGIVDYTRLMYMLVDYVAYASVVQQALAAQLTIVFVGLGFRAWLVLRRIVLVS