Scaffold Ga0308401_1000425

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1000425
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12033
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F059420	Metagenome	134	Y
F061432	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_100042510	F026171	GGAG	MSRELRTLRAAVKSARLADLPVAQALKALADIPEARAFRLTPDVLRRMLLESLPERYAVFLLDRAGYRVEMSIADLAYFARYDEILAELAVSVILYLDKE
Ga0308401_100042513	F061432	GGGGG	MNERIDLLERGDSFAPATARVSWFGSVNVPSNSNVTLAIAGLSEVSGNIFEYVSAAQALRIKQAGVIGFLVNVVCNATGVGNISVLMRQASPLHEWGLAVQPYYLHAGFAFAAGGTRLVNVPSGGANYQIYVVNSGGTGSFTLQTVDIRLVYLGRR
Ga0308401_100042514	F028964	AGAAGG	MDVAECELEIRVGPPSYDLSAYGDVLMVMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFAGSFRDRWIITPDNVPPSVNVRTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKNAAGNHNIEPSIALVFAHGLPRNGLFRPRWAGSIKYEAWVYDRSQPTAGVALGYGHGEDRDVTRERAARGLFSGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQAMPRLGDQVFLVAGDHQRCAGIAHVVSERYTVTGGQVASAEVGVVQI
Ga0308401_100042515	F059420	GGAGG	MEIELFRGTSTLTTLHYRNVPEQYSWVLRDFQGDLIDEVEVLTRDALGGRTLVVGQQGRARRIVVVLDVQGTSMPNLHAAIRELETHTRWRKGTPLELRVRAQAANPWSVIEVVLEQMSAQFEDDQYRATVTLRFACRSIYWREGIGVFPSSNSTLTGNAFVVNLSTMTFTLITGISEAISNIEYRANSNEWIIFTTSQVWRAPAEGGAAALVGSVTGSTQLRGCVAHDGSILAVAQGANILVRFTYPFSGPTGLGAFNGVPVRVRQFGNSYVSVGEFSQFQTTGGLAGMVTTDVNGNITNTFSPFPTSVIFPGGGRIRDVLIQDSIGVAIAHRAPSPSQSWVVVWSSQVAPYYVADGASSWAPLEIDQSSAIDDVTICAESWIHAGRTFNTLCRLRNLSGIVPYAYPTVSVGSVQDGCAVERFAFATSEPRKVFRLGDDGTAMPLFTASVNSFAIRRVGNLMCIGYATTANVWTPLTVDVGSIANTGATAEIVPRLGGLAVPVFSCYSKVDTEILGEVLDPQTQAANYEPKYHSGGVVTPLPGTNYERMFRGSANEWINRYWFAVGGSVPQNNVTLNRYKHDWR
Ga0308401_10004252	F031690	AGGAG	MNPNTCPKNLLYCASFDVIVGTERNRLYLLASNAEQAAKYVWPTKTRKRTRYVVSCERLAGLKYSDEIEAVAHRYGLQHNHPHICDVMERHKRLASVIIETWTLRWALSLLQDDDTAKTVTINDKGLSIQGVTLGGIALYSAEMLVRSRPLRLAFEQMPRDETAHVDILGHRNARALKVSLGTHVHYVFDCYHGFTAFIPQGDER
Ga0308401_10004253	F029920	N/A	MSDLERAFREERLLKGFIAPGLALSYQPREYLAIGRADRQPDDDDIVLVITLAREAFIIIACEPQREVISSNGITWHLARWLLKRESVADHLPQSERRNR
Ga0308401_10004258	F026459	AGGAGG	MNKLLSQERIEALRAINAIESTIRPSVNSIKMFTAALTAMGSGETIRRALEHLSERVPEREISSVEEMIHTLHEIGEADIASKISRRIAELQDGESADAVAGLYVLVELLPHDAYMAFGFSVECAQVRCGEHPNPQELLRDIDFDREGFRFGPAWEFWGERAPEAMKVARAAFIAALLHAAGLGDEPEYPEPLADY