NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000425

Scaffold Ga0308401_1000425


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000425 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12033
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026171Metagenome / Metatranscriptome199Y
F026459Metagenome / Metatranscriptome197Y
F028964Metagenome / Metatranscriptome190N
F029920Metagenome187Y
F031690Metagenome / Metatranscriptome182Y
F059420Metagenome134Y
F061432Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100042510F026171GGAGMSRELRTLRAAVKSARLADLPVAQALKALADIPEARAFRLTPDVLRRMLLESLPERYAVFLLDRAGYRVEMSIADLAYFARYDEILAELAVSVILYLDKE
Ga0308401_100042513F061432GGGGGMNERIDLLERGDSFAPATARVSWFGSVNVPSNSNVTLAIAGLSEVSGNIFEYVSAAQALRIKQAGVIGFLVNVVCNATGVGNISVLMRQASPLHEWGLAVQPYYLHAGFAFAAGGTRLVNVPSGGANYQIYVVNSGGTGSFTLQTVDIRLVYLGRR
Ga0308401_100042514F028964AGAAGGMDVAECELEIRVGPPSYDLSAYGDVLMVMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFAGSFRDRWIITPDNVPPSVNVRTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKNAAGNHNIEPSIALVFAHGLPRNGLFRPRWAGSIKYEAWVYDRSQPTAGVALGYGHGEDRDVTRERAARGLFSGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQAMPRLGDQVFLVAGDHQRCAGIAHVVSERYTVTGGQVASAEVGVVQI
Ga0308401_100042515F059420GGAGGMEIELFRGTSTLTTLHYRNVPEQYSWVLRDFQGDLIDEVEVLTRDALGGRTLVVGQQGRARRIVVVLDVQGTSMPNLHAAIRELETHTRWRKGTPLELRVRAQAANPWSVIEVVLEQMSAQFEDDQYRATVTLRFACRSIYWREGIGVFPSSNSTLTGNAFVVNLSTMTFTLITGISEAISNIEYRANSNEWIIFTTSQVWRAPAEGGAAALVGSVTGSTQLRGCVAHDGSILAVAQGANILVRFTYPFSGPTGLGAFNGVPVRVRQFGNSYVSVGEFSQFQTTGGLAGMVTTDVNGNITNTFSPFPTSVIFPGGGRIRDVLIQDSIGVAIAHRAPSPSQSWVVVWSSQVAPYYVADGASSWAPLEIDQSSAIDDVTICAESWIHAGRTFNTLCRLRNLSGIVPYAYPTVSVGSVQDGCAVERFAFATSEPRKVFRLGDDGTAMPLFTASVNSFAIRRVGNLMCIGYATTANVWTPLTVDVGSIANTGATAEIVPRLGGLAVPVFSCYSKVDTEILGEVLDPQTQAANYEPKYHSGGVVTPLPGTNYERMFRGSANEWINRYWFAVGGSVPQNNVTLNRYKHDWR
Ga0308401_10004252F031690AGGAGMNPNTCPKNLLYCASFDVIVGTERNRLYLLASNAEQAAKYVWPTKTRKRTRYVVSCERLAGLKYSDEIEAVAHRYGLQHNHPHICDVMERHKRLASVIIETWTLRWALSLLQDDDTAKTVTINDKGLSIQGVTLGGIALYSAEMLVRSRPLRLAFEQMPRDETAHVDILGHRNARALKVSLGTHVHYVFDCYHGFTAFIPQGDER
Ga0308401_10004253F029920N/AMSDLERAFREERLLKGFIAPGLALSYQPREYLAIGRADRQPDDDDIVLVITLAREAFIIIACEPQREVISSNGITWHLARWLLKRESVADHLPQSERRNR
Ga0308401_10004258F026459AGGAGGMNKLLSQERIEALRAINAIESTIRPSVNSIKMFTAALTAMGSGETIRRALEHLSERVPEREISSVEEMIHTLHEIGEADIASKISRRIAELQDGESADAVAGLYVLVELLPHDAYMAFGFSVECAQVRCGEHPNPQELLRDIDFDREGFRFGPAWEFWGERAPEAMKVARAAFIAALLHAAGLGDEPEYPEPLADY

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