Scaffold Ga0308401_1000379

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1000379
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13022
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F028964	Metagenome / Metatranscriptome	190	N
F038570	Metagenome / Metatranscriptome	165	N
F059420	Metagenome	134	Y
F061432	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_100037910	F059420	AGGAG	MEIELYRGTSSLTTLHYRNAPGQYSWVLRDFQGDLMDEVEVLTREALGGRTLIAGQQGRARRIVIVLDVQGTSMVNLHAAIRELETHTRWRKGTPLELRVRAQAASPWNSIEVVLEQMSAQFEDDQYRATLTLRFACRSVYWREGIGVFPSSNSTLIGNAFVINLSTMTFTPITGISEAIINIDYREASNEWIIFTTTQVWRAPAVGGAAAFVGSVANSTNLRGCVAHDGSILAVAQGVNQLVRFTYPSSAPAVLGAFNGTPFRIRRIGTSYASVGEFSQYQTTGGLAGYVTTDVNGNIINTFSPFSNSIIFPGGGRIRDVLIKDNIGVAIAHRAPSPSQSWVVVWSGQVAPYFVAEGASSWGPFEIDQSSPIDDVTICADSSIHAGRTFNTLCRLRNLGGIVPYAYPTVNVGSVQDGCAVERFAFTTSEPRKAFRLGDDGTVMPLFTANNNSAAVQRVGNLMCVGYVSTTSVWTPLGVNVGVISNTGATAEIVPRLDGIAVPVFSCYSKVDTEILGEVIDPQTQAANYEPKYHSGGTVTPLPGTNYERMFRGTANEQAFAYWFAVGGSVASNNITLNRYKHDWR
Ga0308401_100037912	F025421	GGA	MIDLTKVRRIDRNAPGSFMEYARLQSVIAEGDLMAIARALENYGVDTRELSFNELVDVIKHIAGEPAPLPATSATE
Ga0308401_100037913	F038570	AGGAG	MPATHLRRVQLGQQSTFNTPVAATSILRGVKDGSVTINHNDAVVEELGRTASDLVVVSQRHAEGELELQTTYEDILYGLFGLFGPVAPSGGARTFNAPVVNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTESWSFIGRSVQATALTGSLPTRIVTPVLSRHASWFVDPTGTAHGTTPVPGTVIEAELSINTNRHLKMFEGAQPLDWGEGRWEAQLTLTAEFNATAKAWVDALLTDRVARNIRANFVETANMRELRIDFVGLIAESPELFGDRDGNMTVELTFNALVAGPLNNWLQIRTINGVGTLP
Ga0308401_100037915	F022604	GAGG	MLSTVNAVYTVVAAVPGIVAAYTTVPMSVTTATLPMALVTPVGENRRQHAHELVRIETLVRVRIVHSPVAQGITEAQQSALYALADAVMMALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISVMARVVEKI
Ga0308401_10003793	F026459	AGGAG	MNSRKVEMLRTINAIESTIRPSANSISMLISALTAMSSGETIRRALERLSKRAPEREISSATELVRALYDIGEGVSALKISRLIAELKEGKTVDATYGLYALVDLLPHDAYMSFGFAVESAQIRCGEHPNPHELLRDIDFDREGFRFGPAWEFWGERSPEAIKTARAAFVAHLLHAAGLADEPDYPEPLAD
Ga0308401_10003795	F026171	GGAG	MSRELRTLRAAVKAARLADLPVAKALKALADMPEARAFQLKPDVLRRMLIESLPEQYATFLFDQAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE
Ga0308401_10003798	F061432	GGGGG	MNERIDLLERGDSFAPATARVQWVGSANVPANSDVTIPVTTVYEVRGNIFEYVSSDQALRIKQSGVIGYTVNVVCSATGVGAINVLMRQASPFHEWPLVIQPYYLHAGFAFLTGGVRLVGIPPGGANYQIRIANTLGTGSFTLNIVDIFLVYLGRR
Ga0308401_10003799	F028964	AGG	MIGAEVTLALTSLRQPGTRTGAIALSGSFERRAMEVAECELEIRVGPPSYGLSAYGDVLMVMLPDRREYYFVTAIERRNIYYVLRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFASSFRDYWIITPDNVPPSVDVNTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAVKDAAGNYGVEPSIALVFAHGLPRHGLFRPRWSGTVKYEAWVYDRSQPAAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGDNQRCAGIAHVVSERYTVTGGQVSSAEVGVVQI