Scaffold Ga0308401

Basic Information
Taxon OID	3300031767 Open in IMG/M
Scaffold ID	Ga0308401_1000156 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20752
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (77.78%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

20752

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (77.78%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F038570	Metagenome / Metatranscriptome	165	N
F042758	Metagenome / Metatranscriptome	157	N
F059420	Metagenome	134	Y
F061873	Metagenome / Metatranscriptome	131	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_100015610	F026171	GGAGG	MMNRSLRKLREVVKSARLADLPVAKALKVLADMPEARAFKLAPDVLRQMLLESLPERYAVFLLDRAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE
Ga0308401_100015614	F028964	N/A	MIGAEVTLALSSLSGWGNRTGAVALSGSFERRAMDVATCELEISLSVSSYNLSAYGDVLMVMLPDRREYYFITAIERRNTYYVVRGETFLRYLRDYYPNRYAGTSDAQWSGDAARGVLISLRPTESVPMHGGGAGLRERLIVVPDNVAPSVNVSTSFAWASRLESAKEITRLAHAKGFPLVWWFECGRWSDTKNEVGTYRIEPSVSLVFAHSLQRFGILRLWWNKTIRYEAWAYDRSQPTAGVALGYGLGVDRDVARAWSPRGLFGVFTYWEDRIDGRATGSSAAAQAALMRWRPVEAGAGQVFADETPRLGDQVFMVAADNQQCAGVAYVVGERYTVAGAQVDSMELGVMRI
Ga0308401_100015615	F059420	GGAGG	MEIELSRGGAALTPLHYRSVSGQYSWVLRDFQGDLMDEVEVLTREALGGRTLVAGLQGRARRIVIVLDVHGTSMVNLHAAIQELESHVRWRRGTPLLLRASAQGTVWSSVPVVLEQMNAQYEDDQYRATVTMRFACLSVYWQESVGVVPASNNTLTGIAFVVNLSEMSFTPITGITEPITNIEYRSPSNEWIIFTNTQVWRAPITGGAATLIGSVTGSTFLRGCVTHDENIIAVAQGVNQLVRFTYPSSSPAVLGSFNGIPHRIRRFGDQYIAVGEFSQYRTTGGLAGMVVVNINGDILNTFSPFPTSVIFPGGGRIRDVLYKDNVRIAIAHRQPSPQRSWLVVWSEQVSPYFVAEGESTWSPTEIDQSSEIDNVIIGADSPVHAGRLFGTLCRLKDLSGVVPYAYPAVSVAAVQVGCAAERFLLGGSELRKVFRLGDDGTVMPLFASNTNSIAIRRKNNLMCIGFRDVATLWTPVSVNVSTVPNTGTTAEIVPKLGSLSVPVFSCYSKVDTEIFGEVIDPQTQADEYEPKYHSGGVITPLPGTRYDRMFRGSANEEIERYWFAVGGSVPSVDVEINRYKHDWR
Ga0308401_100015618	F025421	N/A	MIDLTKVRRIDRNAPGSFMEYARLQATIAEGDLMAIARALESYGVDTSQLSFNELVDVVKHIAGEPAPLPATSATE
Ga0308401_100015619	F038570	AGGAG	MPATHLRRVQLGQQTAFATPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLIVFSQRHAEGELELQCTYEDILYGLFGLFGPVAPSGNARTFNAPITNYAAPQIYTIEYGTTGAEYRVVGGIIREWTLRYEANAGVTESWAFIGRSVQANALTGSLPTRIVTPVLSRHASWFVDNVGTAHGTTQIPGTVIEAELSINTNRHLKIFEGPQPLDWGEGRWEAQLSITAEFNETAEDLVDALLTDRVARNIRVNFVETASMRELRIDFVGLIAESPELFGDRDGNMTVEMTFKALVAAPLNNWLQIRVINGVTTLP
Ga0308401_10001562	F029920	N/A	MISISDLERAFREERPLKGFIAPGLALSYQPREHLVIGRADRRLDAEDVALAVALAREAFIFLARKPQHEVIELNSITWHLARWPLQRELVADHLPQG
Ga0308401_100015621	F022604	GAGG	MLSAVNAVHAVVAAVPGIVSVYTTVPMSASTAALPMALVTPAGENRRQHAHELVRIETLVRVRIVHSPIAQGVTEAQQSALYALADAVMAALMSDVTLGGQVDHIAGLDAEEPSIYTLAGTDYLSISVMARVVEKI
Ga0308401_100015623	F042758	AGGAGG	MKPTDFLTIAGRLPAQAITGATNTNSVDMQLLRGVAAVCIVGAATTPPSFTIQSSADNTTFTNLAGKSVSSISANSEAVINIRDEELPDGHRWIRAVVNGNATVAVVFIGTLARNNPPAKLASTTIVD
Ga0308401_10001565	F061873	AGGAG	MNEIQMNETLKDLIERGVAIRNQRITEEKARIAALNEKLAREREERKREIRAILSAPLDDLAEVDAGVTHAYIYVRKPFPGKGKVRIYASKKDDQWHLLEFAAYNPDGYYLKFQTLEEALAFAAGALEI
Ga0308401_10001567	F026459	AGGAGG	MNSQKVQMLRSINQIESTIRPPVNSLSMFIAALTAMGSGETIRRALERLSKCTPEREIQSADELIHALHEIGEADIASKISRRIAELQEGKSADAVNGLYALVELLPHDAYMSFGFAVESAQIRCGEHPNPQELLRDIDFDREGFRFGPAWEFWDERAPEAIKTARAAFVAHLLHAAGLADEPDYPEPLAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308401_1000156

Overview

Ecosystem & Geography

Associated Families

Sequences