NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315322_10719846

Scaffold Ga0315322_10719846


Overview

Basic Information
Taxon OID3300031766 Open in IMG/M
Scaffold IDGa0315322_10719846 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)625
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027022Metagenome / Metatranscriptome196Y
F058280Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0315322_107198461F058280AGGMKAAIELDVFQEMKLEENTGEIVMRPMAEMMDAPLDFIDEKDEPKWATLSEVLIETMIDPYIVAASTEVPNEKDYHMMV
Ga0315322_107198462F027022N/AKDLSIDYNMIITTTVLFVFQVIIVTWIVVTNPEPCPKEYIKSGGDVTKYCEMTSAGLGYTWSLKE

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