Scaffold Ga0315322_10427347

Overview

Basic Information

• Taxon OID: 3300031766
• Scaffold ID: Ga0315322_10427347
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 880
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F062171	Metagenome	131	Y
F093714	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315322_104273471	F062171	GGAG	MKIGDLVSYGTMPHWKLEGCLGILVRKLQWNDSWIEGINWDGDPAWWIQYVGDEAPTW
Ga0315322_104273472	F093714	GAGG	MKIGDLVMKPLGSLCRDDAGLGLVIEILEKPGLFPTRSGYKVQWSNDYGTYWASEDKLERVNENR
Ga0315322_104273473	F029400	GGAG	MKIGDLVTFCPEAWGTPLEDRPLGVVVEIELSPRGINPLVDVLFPGDDIPYSSKAKDFEVVNEDW