Scaffold Ga0315322_10289806

Overview

Basic Information

• Taxon OID: 3300031766
• Scaffold ID: Ga0315322_10289806
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F048916	Metagenome	147	Y
F056153	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315322_102898062	F056153	AGG	VDGANEVASFIESVGVPVATALGLGGALWWLIKYVLGSIVDKITEAQAQTEADIKDLKGIVIALIDKTTQAQGDLIRLDTMIRVRYGLAPDEKRIGRKPDTKEK
Ga0315322_102898063	F002078	GGAG	MDAFANQEWFQIVGEIVLIFTAITGSMPDRWVQKIPVLGTMWPIFNWLAGNVFNNINHPKGMSGAKEVEKEIDKAKSKIRERQSLPDVLDGL
Ga0315322_102898064	F048916	N/A	MSLTGCSLVSELVAPTANFALGLYNADTYYSKECAWYEEVNFTATTKAWIIESKPDPVALKDFAKVARNNDIFKEVCDAGDK