Scaffold Ga0315322_10087643

Overview

Basic Information

• Taxon OID: 3300031766
• Scaffold ID: Ga0315322_10087643
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2255
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315322_100876433	F006383	GGAGG	MLDSTDKMWAVQQPGTILRARHSAKYGQLALVLARAYAGPKPSNGYPPRQYVKMQWLGTGERFEEMLVNAHNCFDIVSSCDTLGPEEN
Ga0315322_100876434	F021674	GGAG	MERETYNTRLKSNPEDIPVGSLLRVKKHCRKNITIRHNGEYGILALSDSGKYITHDVLFPNGTRCIYMPLNWEVVSYAR
Ga0315322_100876435	F015346	GAGG	MNPEWKRYKVGDLVAVASNRVLGIITKSNYWALDEYLGGEIEFVDVMFGSSVSKQYPVRYLAEL
Ga0315322_100876436	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIKELNKSYWNVLKPDGDTVFIHKSHLTTRMY
Ga0315322_100876437	F059941	GGAGG	MKLGTLVRFAAYGAVMDTGYVSKYDEDPKFMWVECVKMGPQRVSKDSTMLEVVSEAG