Scaffold Ga0315322_10065240

Overview

Basic Information

• Taxon OID: 3300031766
• Scaffold ID: Ga0315322_10065240
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2658
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049286	Metagenome / Metatranscriptome	147	Y
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315322_100652402	F049286	AGGAG	MPKYEVTRSYTVVCVATVEADTHDHAEEIACGSDDIHWKEYDNDYDYEVYVDEIEKS
Ga0315322_100652403	F077246	AGG	MDLSNNKIVIIPESWDEIQQFINEQEYPAYATVLALMVHNYTLSQFSKMGGYAFSEWKQEYLKNA
Ga0315322_100652404	F091977	N/A	MTLTEKKIQRMIDNYQFMQTCFIPYDDKTPAEQMTQLYYFLRDQMEDVERIDRQEASNRRHNLNSSAYAGKAGH