NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315322_10058627

Scaffold Ga0315322_10058627


Overview

Basic Information
Taxon OID3300031766 Open in IMG/M
Scaffold IDGa0315322_10058627 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2818
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001930Metagenome615Y
F012510Metagenome280Y
F016590Metagenome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0315322_100586273F016590GAGMKTFKGYLTEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRSTVFHVTDHAGLGRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVIKDYFDGVEKIIKKHKKVMGNIFYGYARSKRSTEDSWDEQLVNNIKVKTVHLIKPTQRKIDTANPDRTHPIDSYEFAKEKAEKLFGTVKEWDFSTELEIYTREVVKKEQPPRNIAY
Ga0315322_100586274F012510AGGAMRTFKEHLNEVYKTYPGKGWLMDGPDIKPKDIIWRSKVHHWDNTVRSDNTRFIITKTGKGKDKFQMWAMSDKSGEVLFHFGDKPTLDAAKEFASIRRWQEKK
Ga0315322_100586275F001930N/ATRWTPLLVEKWVVYKMKTFKGYLKEDAPAWQSSTSQKIFDFQQIQYMQIPLTSSTMEWIFQVQLPRATVFHVTNGIGLDKLKRLQNKKKSISAFFNMDASTMEHGIQGGGGLVVELDANIIMSGKGDLMSMPDKTGRRWVELMNIDPKKTTHKELEQLLIDLAIKHDPKTKELIEIEPDIGLGAWWHLRMNFKDDKKKMSLIIADYIDGVNAILKKHKKDIQGAVHGYYVRRGAVAVKHPSGRMVGGDSKIKEWNVYDEQIVDKIKIIKVHTFNTTTRETDWIAKSVIPRLGKIPLRHWVGGATELSTYVSQVAEAEVRSIGRSKP
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