NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326513_10447918

Scaffold Ga0326513_10447918


Overview

Basic Information
Taxon OID3300031760 Open in IMG/M
Scaffold IDGa0326513_10447918 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1159
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023770Metagenome / Metatranscriptome208Y
F096242Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0326513_104479181F023770N/AMAKVEFDPGIDSVRGILMGTDPFYIRRYPSKDGVMHIVQARPDRSGHTPSPAEAHTRIVFAETFGRQKHLAFLERTMKGQMEIPFD
Ga0326513_104479183F096242N/AMLLKLIKTRQFISGAHCEVWEINHFTGNKLLAKVFVLNEHLKLELIYRLTIHRAGIFIHGQQCGWQWDNPNEESLVTDYLLSVQAIHEEIRIEICVPDPFLPGYPHVDRNPNDYPIVLGDFD
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