NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326513_10003399

Scaffold Ga0326513_10003399


Overview

Basic Information
Taxon OID3300031760 Open in IMG/M
Scaffold IDGa0326513_10003399 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11559
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088010Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0326513_100033993F088010N/AMKKNFFGKLMGVLLLAVMVLVCSCNGCKGETPKIDDPVVVYHDYDGVVQDFTAGVSHIQTLHRQTMFSLIGGKEYQWRNSRVLLNDTLTAENIDDLHVVAVNDVFFYWDSQKGPMVQYINSHVKYGVQIPYPINDVWIEDADMSEQPIKLSAEQALMRLKEWNGILPKGFNFLTLRYPVGPCECNAQWVIGNEFDVIFIDAVTGDISNWCPAFNPNNKAKGGDFGKPLGEWP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.