Scaffold Ga0326513

Basic Information
Taxon OID	3300031760 Open in IMG/M
Scaffold ID	Ga0326513_10002942 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031760 Open in IMG/M

Scaffold ID

Ga0326513_10002942 Open in IMG/M

Source Dataset Name

Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12446
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12446

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5357	Long. (^o)	-121.7593	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.5357

Long. (^o)

-121.7593

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F052997	Metagenome / Metatranscriptome	141	Y
F084920	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326513_100029421	F084920	N/A	MLHLIHLNLLTSNLIKPTNGGEAATSPRFLFKIWGAQAPTMETSMEKEFGMQELYFVQLKSTSNIEINGRQIQPGEVIAAFDKIQIANFKDIHREASAQGGYQNRKLVIWNRTEGVDLVFMQGVFSKTQLGLMHNAKLLNIDDNQIVRISQRDELEANSEGIITLTHKPINSYIFVYNKETGEKLTGLSMISEKEIQTPLVYKDVIVDYEYGYDNGADVSLIGEDIFDGYVSLEGRSRIKDDVTGETHTAIIYIPKLKITSDFNLTLGSNAQPIVGKFSAVALATGDRKQSKALEIYYLEDDLDKDSEWM
Ga0326513_100029424	F041054	AGGAGG	MSIRNCGDIGVNTQYIVKRLIANQNLLKLLYYTDKDPLAGDDLTQDQIQDEVFEKLIKIIPRIGPKETAHSIITITMQRGTGLAANGEFKNVLVKIEVFVPMTQWIIKNSNLRPFAIMGEIQNSLRGKKIEGLGKMQGGDFDLDFLSEEMTAYLMTFVITSYD
Ga0326513_100029425	F052997	GGAGG	MSYYEEVYLKRLNRYGIDFQSRMQRQREENFKLQLKKSVYYIDFEYGGEMHEAELPPYKQNETKDLHYLLTDVHLDMPNGTILMLPDKDGERVPWMIYWLEDYVASGYNRYIVLRMTHYLTWKNREGKKCNAWAYFYGQEDNMLKDELKSRSRNKALYTENLKLSFFITPRNVNIRKDDYLEVGNDELKEAYVVTGYDIQSTPGVEFVSVDPQYIRDLSEPPIQSAEDSDNDFFWINKGGEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326513_10002942

Overview

Ecosystem & Geography

Associated Families

Sequences