Scaffold Ga0326513_10002246

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326513_10002246

Scaffold Ga0326513_10002246

Overview

Basic Information
Taxon OID	3300031760 Open in IMG/M
Scaffold ID	Ga0326513_10002246 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14320
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5357	Long. (^o)	-121.7593	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094633	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326513_1000224616	F094633	GAGG	MTLGEIKDRIMFQTNNDAEDIEDYLPYVVDYINEGYDRLMNAWNKTHVPTGDYDRLEIDPDEPLLPEWTHPAIADWATWLIYRNGNPQKQQRGMAFRSSFEEVLSRISDEGGENGVNEDGTRKHFKFFRNIPR

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