Scaffold Ga0316219_1047850

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1047850
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1772
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F046110	Metagenome	151	N
F048063	Metagenome	148	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10478502	F048063	AGGA	MSIILTCNVTGKTVKWSNQSIIDAKIKQYGSLEAFQKAYVSRGANKKPKQKSALSIASDGEVDLMRSILMEGVKLAPSLSTKHMSNEEYVKMYEAKVKALEEAGASASEIGWMKQRLERWRG
Ga0316219_10478503	F046110	N/A	MTNRFDESLMHLHDQLSSITAHNVPVNLINTMEQQVLLIQARQAYVTGHKQSYELILRELMEHIQLKLTGKN
Ga0316219_10478504	F021232	N/A	MKMKQLKQTYIIFTASDTVYCTAESYDLANEIIEADGLINAIVQQVNHITNIKEGNPVTISYENTSTYDCTTDDVNDVRHKDHY
Ga0316219_10478505	F055384	N/A	MITKPTNTFLAAEFPTWIDLKVGTVMEVRKEGQTGYLVDHPIIEGDCVLPKTNCIEVRDEVECCVTL