Scaffold Ga0316219

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1013053 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031759 Open in IMG/M

Scaffold ID

Ga0316219_1013053 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4489
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4489

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.0411

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F027087	Metagenome / Metatranscriptome	195	Y
F086513	Metagenome	110	Y
F103136	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10130531	F086513	N/A	DLEGLMTDFPTARELEKFVYDQTGYVLTLKGRSNKFKYQTAMDVLNGQEPDSALQGTENPYLDKNDIIPVDKLREHFPVPGEVQGLPLVTIFQTSQFPHPDPDWKAGGQKCDVVFKKYINNAITYEIIGPVAARAVGVRVNKFGKEVPEKYTWVDPRTGEQIIRDSSGRLTPIGTRLRAAMQKQKVNKTDWWTAWIDRDFVLGGDGAGIDDPWGV
Ga0316219_10130532	F027087	N/A	MNEFGKALAQGQERQIQEVKILQKVNAVHRDAFQQKYPGQVEHCLRLTMERLQLGLDKRDGSDPSNPDTWRMTSTELHNLAQTAYLLNEIRRGF
Ga0316219_10130534	F103136	AGGA	MLDLKNVVISNLNGHTGMMARFVKMKSLLDQKCAANLRLLATKNNINRISDYHYLNLAVTNSTEPVNGLDYIHPVVKPVVDYATSVIVKGIAQNGEINFEFVADNEADDDAARQATNMVHKLINQNNDPHTILQHWVMDACLHKNGEMLIAPMRESFTRYVTTTGTLDQLSAFEQQANEAGLDCKRRSRRKKSVDLQQVAKETGDFVNGLSKEQTEENLNTRIKNALLGAEGNFDEMTEQPENVELRDGEDHIADSIARNTIYEAEYKLTGYNLNIKFRPIAQHYWMCDPTVIDIQEQPFCGFYKPMSIQEATELYPDIDLEEFKVYAEYSNVGSYQAGSLLNNLALHARDSVPINGLPAQGYSAQEPEARQVTVLTVWNRYDIDGDGQLELIELIYSGQYVISAREVEFIPVANMCPKPLAQNFYGMAIAESVVPMQEYMTSGYRAELLTGLLQSTPRIGVKPDRVDFEEIQDGEAAIFILDSKFDPAKDIYAMPIPQGNPTFLDNTMSRMQQDSMAMVGMTSPQDVFNPEVMDPGNSGAKLNLALSPNQVIQDNTVKNCAEGLKDAIWLIWRTLVAYGDDYGVKKLAQEFHPDKKPEFIDYQSFDDMNFNERKTIHVDLALGMKSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0316219_1013053

Overview

Ecosystem & Geography

Associated Families

Sequences