Scaffold Ga0316219_1012899

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1012899
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4536
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F017785	Metagenome	238	Y
F086266	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10128991	F000934	N/A	SIMSNLTTLLSICETVAINDQRFVGQAISRNQRISTSEIVTNVPFQFDMKPMNYLLYSKNRDLLANLRYFDKSLEQYLSFGATGWVNYIQYRGDMTSSQISACQWQTSCAGQVLVLGALPSITSTKFIVRAGDFMQVGRYSYIATTDVIRGTGTTVSIPVHRSLIGTVASPINAVIGEFGTTVSMGGTNYTGITFPVILQQYPGYTLVPMTNDSFIAWNQTFKAFESIV
Ga0316219_10128992	F017785	N/A	MNVIPPVIDTNNIRYADFVRIVTGTNEYRFSTAPTALTIPAIDALPFDGLGQLVDIGKIQRDIKSTANQTSITLVGIDTAMLGLVLNGDLKGSQITMWKGFFDTSGNLLTTGGVGGLYQYFYGFINSFSIGEQWMEEARTYVGLVTVSAANIQMILQNRVAGRFTNDASWQFFTPNDTSMNRVAVISTLALAFGKQT
Ga0316219_10128993	F086266	N/A	MIRYANKFDFPAICDLLRHFCHQHKFAILKDEATWSPEYVQKQLSMVLAGAGFILIAEDGSGFMVALKAPCFFIENAFSLHEIIWHATNDKTALKLFKRFIEIGTAMKENGEIKEAHFSCFSESDFSRYGATKLQNTWKI