Scaffold Ga0316219_1009848

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1009848
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5582
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050093	Metagenome / Metatranscriptome	145	N
F055379	Metagenome	138	N
F066388	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10098484	F050093	GGAG	MTEETTGVLEKELAGVNEQIVRLEKYKTALNAALEARLDLDGFINARPQVYSPQTVTLTALTEGKDSPNARPNSLEMARVVLLNLDGEEKTPDEIRALIKKTYGIGPAKTLDQMLYKRASKGTMFYKTAEGRFGLLALRATTEDVRTPTTAVA
Ga0316219_10098485	F055379	GGA	MGTWQTLLDVCPYIPIPLMAILFVLGLWHEIVCSNRCIAADIKPPSIQDSTLYKIEPSKGYKTKSDDHAIGYLT
Ga0316219_10098487	F066388	N/A	VIGYRRGPSWPPQQAFFESGPIGFTYFAAMWFRYYLAEHIVAAMGELESREGVLQLDRGITCIGKVSSHEDFAHSSDALPHADGNFVDQHGTAWAADTSLMETQLDISEMTDGWVRQTSDKLFRNLTTIERWLLQMIFRKEFNWVQISAMLQCSTQTARQQYNDVMKYLRGHVGVPEVIA