Scaffold Ga0316219_1009208

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1009208
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5898
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F070810	Metagenome	122	Y
F093229	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100920811	F026556	GGAGG	MTSALIKLLFGIAFIVIAIALGPILGIWALNTLFPVLHIELTWQTWLAFNILFSGTLATRIKK
Ga0316219_100920813	F009462	GAG	MNWKNIKHGIVLKEIMMELHESVRDTFKTMVIKEHEGFRLTLNKHEVLSPKGLFSIDMVQESLKDGEVVDSQTYNFFMTKEECQALAYGLTA
Ga0316219_10092086	F093229	N/A	MEAQVPAEGILMKKDWGDAKVYKIVCECDDCDHSHNVWIEADETGVSVTVYTQQKTKWWALNRWQKIWTLLTKGYIEVESNLIMGEQQALNYAETLKSAVKDVKEFRDAKRQRHN
Ga0316219_10092089	F070810	GAGG	MSFDVRVDWNNQHNEWWNETCISVVEVYGLPGNRWTYHPHEDYMLFKFKSQKDSELCKILLSEKI