Scaffold Ga0316219_1002947

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1002947
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14540
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F004695	Metagenome	427	Y
F070626	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10029471	F070626	AGGAGG	MDIEWSLVHPLHDVEDIVFMADGMYGGEVSGVLTTDKQVFRKNVTVVSTLQLFDRSKEFLAIARGEGRILGFCWFDRGGYTTYSNEEISNAKFHHVDLGLSVRTRVKLINAMIDQHILWAYQQGIPVVCSTSIRGEHDGFMRIHRKRGFKVNGSYAWIKTTEGLNGIEGYKA
Ga0316219_100294710	F004695	AGG	MLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPVVTPGIDYATAVITKCLMPDGKVNFEFERFDEDDQEGAEQATEMVKYFINNKNNAYQVIRDWAQDALMHKNGIVMVTPIRENIVQYKEVKGTRDQLKAFELQAAESGLKTLRQEMRKTDVNLQQAMADAMQPGDEQEEGQEVDPSAELGEAIQKNTIYTAKYKCTGTKTNIRIKHVAQHYFVCNPTITQIMYQDFVGFYEPMTIHEAKVQYPFIDMEEFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDGDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPSKHVYEFAPLQGNLAYVESAMQSLKEDNMAMIGMTNPSDSLNPEVMKDGNSGFKLQTAMGPNQLIQDEMIKNCAIALQDVIHLVWHTMIQYADDYSIQQLAHVCSEKGQGFIDAESMANYKFIDRKMINIDLGLGFMSDENRLTRQQLITQAQQQFAQVMMQLTPDMPEMFEKARRPYEDTLRILGIRHVDAYLPTLEEATKILQEKAKAPPPVEDQLHQSKAELNKATAQEVMAKAGLITKQTQDIDVDNMFDAMAAKKGKLKDVRID
Ga0316219_100294714	F000857	GGAG	MELNLDNEEAKINEDYYMKGNLEAGFDGILSRNNKMYNEVKSGTWSQTFKTDRIDYKVGAEDGVRYVQYTQHNVEAVKDYCKGRREFYKMIGTTDNPMFAGTFEAMNLPKCFAHEISSKWFNNRPWELIKREKADKILFYAIVNTYYSDFVCHPSGKIPLPYNPIIPTK