Scaffold Ga0316219_1001575

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1001575
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23597
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008858	Metagenome / Metatranscriptome	327	Y
F017424	Metagenome / Metatranscriptome	241	Y
F018653	Metagenome	234	Y
F085169	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100157522	F008858	AGGA	MADELGFRQTYKQSGNQSSGGGPGEKTIDKGASGSHRDNNWKIGASQAKMAKGSKVGPDKNLKDIGGGNFY
Ga0316219_100157524	F017424	N/A	MKDLLSEIISRTRNEQKKIADAVTAGFNVNSFEDYQRLVGRHEGFSDVLNIINEILTEDEDDL
Ga0316219_10015755	F018653	GGA	MSQYRFILIDEFGGACRQFVSKLEATPYLTSGMSLKALPRQPKANPYAMATLILKEAPF
Ga0316219_10015758	F085169	GGAGG	MDNLIDQYGSIQAAINELEITKQKLKAEILARGVGVYEGLSWFAEVQEYDRENISAPLVRKLSNEDFVKQVTTIQHIKAVVVKPLEA