Scaffold Ga0316219

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1001407 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031759 Open in IMG/M

Scaffold ID

Ga0316219_1001407 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25839
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

25839

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.0411

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100140715	F041560	N/A	MLSILIADQPLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLSSTRSIYETFNGSIRWNGIVLFVGQIKIKTASDKTFEGTLYINKGNFNYEVKDLLLDRVDMGMKTFPTDQDAVNYFNWSLTHFYPEVDFSLPEIANLDFFDPVATNPELMAYNHIFPDGWLHKTTTDGQSRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSIELSRLVIYHSVNLSEVIFGLQQIYYCRFLPKVKVSEFISGLEKWFNCCFHVDSKQRVVRIVSNKEVLLRSEVVEFSKNVLSISQEIPEEITGFRFLLGPDSGDKVYQAQLDSEKGITDYIKGAVQSFSDIPPYPFTWLGDIYYIADTNTWWQLGVNPISFLIEWIQLPNGPTLTDKFFYKWGDDKNKYETIFSSLSDKYIVVSCGNLGTDKDKITPRLFFVGIVGGWGTPVRLKGLANNGNLSLRYPGPNGLFNLYWKDWVNWIMDNRKSVKIEKQMDFIELKNLDFTKRYRINGINYLVSEIAVTLNKSSIKSAQLKCFTAP
Ga0316219_100140716	F040985	N/A	MIDITEEPNLISFAGNPVIYEACSDNYLISLGSPAHFELVVSSIDTTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVGYLGQTFNDFANNIYQCFLSNYDIQKYFNVTLDPPGTSQRSIKLQAKESGADGTVVLSNVGVSGVAAGINIPGTDDVYRDYFGILCLIRDTWNNPIGEDIKPADFIGCARFDISDYIRSKFAAWEMTRFEFPELAGNVRVHGWDYLLKYRVSFAESIAGNVRGLQSDGWKYALAGGLNHELLTSLNEKYLEYFSIPANKSKFLSWLPTTKYSRSGVIEKLFFLFQDNPTGVQYRLVVVITFTDGSHKIVNATPQVTYPAFSVMEFKVGFDHLDLVNAQYGKTVQSWEVYLMDSNDDLLSEVRVFNNDTRVFENEKVFFYRNSFSAYDTFRFLGKAELNLEYERQIGTTVREEKYSFFNAATKQFSAKETESCKANSGWISLQEKHCLRELLLSIEAYEQIGKELFQIVVKSAKVTPFLKDGEYLFNLEIEYERSYQNSFFSVHVPESSANAIILPQPLTWDNMEVSFDDMEITFDQIEY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0316219_1001407

Overview

Ecosystem & Geography

Associated Families

Sequences